Sitemap
A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
Future Blog Post
Published:
This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
ConVarT: a search engine for matching human genetic variants with variants from non-human species
Published in Nucleic Acids Research, 2021
Recommended citation: Mustafa S Pir, Halil I Bilgin, Ahmet Sayici, Fatih Coşkun, Furkan M Torun, Pei Zhao, Yahong Kang, Sebiha Cevik, Oktay I Kaplan
Download Paper | Download Slides
ConVarT: a new search engine for orthologous variants for functional inference of human genetic variants
Published in EUROPEAN JOURNAL OF HUMAN GENETICS, 2022
Recommended citation: Mustafa S Pir, Halil I Bilgin, Ahmet Sayici, Fatih Coskun, Furkan M Torun, Pei Zhao, Yahong Kang, Sebiha Cevik, Oktay I Kaplan
Download Paper | Download Slides
ConVarT: Search Engine for Missense Variants Between Humans and Other Organisms
Published in Current Protocols in Bioinformatics, 2022
Recommended citation: Mustafa S Pir, Sebiha Cevik, Oktay I Kaplan
Download Paper | Download Slides
Matching variants for functional characterization of genetic variants
Published in G3 Genes|Genomes|Genetics, 2023
Recommended citation: Sebiha Cevik, Pei Zhao, Atiyye Zorluer, Mustafa S Pir, Wenyin Bian, Oktay I Kaplan
Download Paper | Download Slides
WDR31 is a novel ciliopathy protein displaying functional redundancy with GTPase-activating proteins ELMOD and RP2 in recruiting BBSome to cilium
Published in Life Science Alliance, 2023
Recommended citation: Sebiha Cevik, Xiaoyu Peng, Tina Beyer, Mustafa S Pir, Ferhan Yenisert, Franziska Woerz, Felix Hoffmann, Betul Altunkaynak, Betul Pir, Karsten Boldt, Asli Karaman, Miray Cakiroglu, S Sadik Oner, Ying Cao, Marius Ueffing, Oktay I Kaplan
Download Paper | Download Slides
talks
Functional Characterization of Joubert Syndrome Associated CEP41
Published:
Authors: Pir MS, Cevik S, Kaplan OI
ConVarT: a new search engine for orthologous variants for functional inference of human genetic variants
Published:
Authors: Mustafa S. Pir, Halil I. Bilgin, Ahmet Sayıcı, Fatih Coşkun, Furkan M. Torun, Pei Zhao, Yahong Kang, Sebiha Çevik, Oktay I. Kaplan
ConVarT: a search tool for orthologous variants and functional inference of human genetic variants
Published:
Authors: Mustafa S. Pir, Halil I. Bilgin, Ahmet Sayıcı, Fatih Coşkun, Furkan M. Torun, Pei Zhao, Yahong Kang, Sebiha Çevik, Oktay I. Kaplan
Enhancing Functional Maturation of iPSC-derived Endodermal Hepatic Organoid through Modified Culture Conditions
Published:
Authors: Akbari S., Pir MS., Agaca C N., Altınay FM., Celik E., Karabicici M., Sutlu T., Sezerman U., Erda E.
Leveraging AlphaFold Computed Structures for Pathogenicity Classification
Published:
Authors: Mustafa Samet Pir, Ugur Sezerman and Emel Timucin
teaching
CRISPR/Cas9 workshop
Hands on demonstration of CRISPR/Cas9 in bacteria, Eskişehir, Turkey, 2019
Role: Hands on demonstration of CRISPR/Cas9 in bacteria
Genetics class
Teaching Assistant, Kayseri, Turkey, 2019
Role: Teaching Assistant